Image Analysis Course 2024

An image is more than a pretty picture.  It contains data that can be extracted and quantified.  During the ten half-day course, students learn about the structure of an image –what a good image is- as well as different techniques to extract data in 2d, over time and in 3D.  The software that we’ll use are all freeware: Fiji, Ilastik, CellProfiler. 

Students get typical images, course notes and access to recording.

Instructors: Matthieu Vermeren

Please give me the name of your PI and the Centre/institute where you are working. Bonus points to those that give their grant number! 

Pre-requisites: You will need to install the following software:
•    Fiji (https://imagej.net/software/fiji/).  
•    Ilastik (https://www.ilastik.org/)
•    CellProfiler and CellProfiler Analyst (https://cellprofiler.org/)


NOTE: You may need to ask IS/administrator for permission. 
NOTE 2: We are using FIJI, which has extra functionalities over ImageJ. Make sure you install Fiji. Fiji needs installing at the root of your C:\ drive, nowhere else. 
 
Course material in form of test files and detailed booklets will be provided.

Location: wherever you have access to a computer and a good internet.